I acquired Teensy++ http://www.adafruit.com/products/731 with the intention to use with Atmel AVR Dragon http://store.atmel.com/PartDetail.aspx?q=p:10500053
My project is relatively large and dealing with USB bootloader trial and error method is getting very time consuming.
Having read the AT90USB1286 400+ pages documentation I found that it supports JTAG. However it appears that JTAG is disabled by a proprietary halfkay loader to protect the code. I wonder if there is a documented path to switch from USB loader to hardware debugger/AVR studio.

